Commits · 1.0.5 · Tobias Fehlmann / mirclean · GitLab

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Aug 24, 2018
- Fix install library dir · af007cba
  Tobias Fehlmann authored 6 years ago
  
  1.0.5
  
  af007cba
- Remove debug output · 746780b7
  Tobias Fehlmann authored 6 years ago
  
  746780b7
- Update ZLib cmake and add patch so that it works with new cmake versions · c0a845c7
  Tobias Fehlmann authored 6 years ago
  
  c0a845c7
Apr 18, 2018
- Allow to build generic binary · 1563c77a
  Tobias Fehlmann authored 6 years ago
  
  1.0.4
  
  1563c77a
- Update library path for cpp_format · cce18e62
  Tobias Fehlmann authored 6 years ago
  
  cce18e62
Feb 28, 2018
- Fix output format determination · e4302bce
  Tobias Fehlmann authored 7 years ago
  
  e4302bce
- Merge branch 'master' of ccb-gitlab.cs.uni-saarland.de:tobias/mirclean · ea299c50
  Tobias Fehlmann authored 7 years ago
  
  ea299c50
- Handle gzipping correctly · d7b16d75
  Tobias Fehlmann authored 7 years ago
  
  d7b16d75
- Update parameter · 1a8ebf64
  Tobias Fehlmann authored 7 years ago
  
  1a8ebf64
- Skip empty sequences in the output · 74922cb9
  Tobias Fehlmann authored 7 years ago
  
  74922cb9
- Fix fastq output · 93d202f4
  Tobias Fehlmann authored 7 years ago
  
  93d202f4
- Allow to not save any statistics · 6123b882
  Tobias Fehlmann authored 7 years ago
  
  6123b882
- Allow to output fastq, uncollapsed fasta and compressed files · e05ac48a
  Tobias Fehlmann authored 7 years ago
  
  e05ac48a
Feb 16, 2018
- Fix integer underflow · 052d1e7c
  Tobias Fehlmann authored 7 years ago
  
  052d1e7c
- Fix default values of opt struct · 27f2d8ea
  Tobias Fehlmann authored 7 years ago
  
  27f2d8ea
- Allow to pass the length of the adapter barcode · 704fef9d
  Tobias Fehlmann authored 7 years ago
  
  704fef9d
Feb 14, 2018
- Handle invalid min_overlap and report match with largest overlap for simple matching · b48ab8c0
  Tobias Fehlmann authored 7 years ago
  
  b48ab8c0
- Allow passing multiple adapters and related options · cda2a722
  Tobias Fehlmann authored 7 years ago
  
  cda2a722
Feb 13, 2018
- Allow disabling quality trimming · 324b23f7
  Tobias Fehlmann authored 7 years ago
  
  324b23f7
- Allow piping · 8f6c2030
  Tobias Fehlmann authored 7 years ago
  
  8f6c2030
- Add streaming (subprocess) support · 904dfc72
  Tobias Fehlmann authored 7 years ago
  
  904dfc72
- Add array hash and tests for poly A trimming · a6bb12cc
  Tobias Fehlmann authored 7 years ago
  
  a6bb12cc
Feb 09, 2018
- Merge branch 'master' of ccb-gitlab.cs.uni-saarland.de:tobias/mirclean · 9ec8dca9
  Tobias Fehlmann authored 7 years ago
  
  9ec8dca9
- Add possibility to search for the adapter only starting from a specified position in the sequence · eb6913c6
  Tobias Fehlmann authored 7 years ago
  
  eb6913c6
Dec 13, 2017
- Update cppformat and catch empty quality strings · bc1661c7
  CCB Admin authored 7 years ago
  
  bc1661c7
Mar 02, 2017
- Handle negative quality values correctly · ad3d4aa8
  Tobias Fehlmann authored 8 years ago
  
  ad3d4aa8
- No adapter required · 7f5318cf
  Tobias Fehlmann authored 8 years ago
  
  7f5318cf
- Handle case where no valid sequence is found · 5ad1f4b6
  Tobias Fehlmann authored 8 years ago
  
  5ad1f4b6
- Fix use of freed memory · e11c4028
  Tobias Fehlmann authored 8 years ago
  
  1.0.3
  
  e11c4028
Mar 01, 2017
- Add further trimming statistics output, allow to pass no adapter (or empty... · f0812d14
  Tobias Fehlmann authored 8 years ago
  
  Add further trimming statistics output, allow to pass no adapter (or empty adapter) and to trim a barcode length
  f0812d14
Feb 28, 2017
- Add possibility to specify termination criterion when reading fastq file · b1e076bd
  Tobias Fehlmann authored 8 years ago
  
  b1e076bd
Feb 21, 2017
- Fix clang flags and update external zlib variables · 7a2f430c
  Tobias Fehlmann authored 8 years ago
  
  7a2f430c
Feb 20, 2017
- Allow to return the found edit distance · f1b85c2a
  Tobias Fehlmann authored 8 years ago
  
  f1b85c2a
Feb 14, 2017
- Generalize destination · e2c70412
  Tobias Fehlmann authored 8 years ago
  
  1.0.2
  
  e2c70412
- Link libraries with mirclean library and generate position independent code for fmt · ca8167a0
  Tobias Fehlmann authored 8 years ago
  
  ca8167a0
- Add install targets · a1dd7180
  Tobias Fehlmann authored 8 years ago
  
  1.0.1
  
  a1dd7180
Jan 31, 2017
- Add dependencies in CMakeLists · fad5fc9e
  Tobias Fehlmann authored 8 years ago
  
  1.0
  
  fad5fc9e
- Add dependencies in CMakeLists · 903a2a7f
  Tobias Fehlmann authored 8 years ago
  
  903a2a7f
- Fix nan results · c34cee9c
  Tobias Fehlmann authored 8 years ago
  
  c34cee9c
- Add gitignore · a2001112
  Tobias Fehlmann authored 8 years ago
  
  a2001112